J3_7O7Z_015

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_015 not in the Motif Atlas

Homologous match to J3_5TBW_002

Geometric discrepancy: 0.0842

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|U|380
7O7Z|1|B5|U|381
7O7Z|1|B5|G|382
7O7Z|1|B5|A|383
7O7Z|1|B5|A|384
7O7Z|1|B5|A|385
7O7Z|1|B5|A|386
7O7Z|1|B5|G|387
*
7O7Z|1|B5|C|414
7O7Z|1|B5|G|415
*
7O7Z|1|B8|C|19
7O7Z|1|B8|A|20

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26

Chain Bl

eL39