J3_7O7Z_019

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O7Z_019 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2504

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|G|1908
7O7Z|1|B5|A|1909
7O7Z|1|B5|C|1910
*
7O7Z|1|B5|G|1934
7O7Z|1|B5|C|1935
7O7Z|1|B5|U|1936
7O7Z|1|B5|A|1937
7O7Z|1|B5|A|1938
7O7Z|1|B5|G|1939
7O7Z|1|B5|G|1940
*
7O7Z|1|B5|C|1955
7O7Z|1|B5|A|1956
7O7Z|1|B5|C|1957

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

Ribosomal protein L12