J3_7O80_004

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUU(PSU)G

Length

20 nucleotides

Bulged bases

7O80|1|A2|G|992

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|A2|C|938
7O80|1|A2|A|939
7O80|1|A2|U|940
7O80|1|A2|U|941
7O80|1|A2|C|942
*
7O80|1|A2|G|986
7O80|1|A2|G|987
7O80|1|A2|A|988
7O80|1|A2|C|989
7O80|1|A2|C|990
7O80|1|A2|A|991
7O80|1|A2|G|992
7O80|1|A2|A|993
7O80|1|A2|G|994
*
7O80|1|A2|C|1001
7O80|1|A2|A|1002
7O80|1|A2|U|1003
7O80|1|A2|U|1004
7O80|1|A2|PSU|1005
7O80|1|A2|G|1006

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Ribosomal protein eS26

Chain Aa

40S ribosomal protein S3a

Chain Am

uS15

Chain An

40S ribosomal protein uS11

Chain Bc

eL30

Chain Bp

eL43