J3_7O80_010
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O80_010 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3581
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7O80|1|A2|U|1341
7O80|1|A2|C|1342
7O80|1|A2|U|1343
7O80|1|A2|U|1344
7O80|1|A2|A|1345
7O80|1|A2|G|1346
*
7O80|1|A2|C|1385
7O80|1|A2|G|1386
7O80|1|A2|A|1387
7O80|1|A2|G|1388
7O80|1|A2|A|1389
7O80|1|A2|C|1390
*
7O80|1|A2|G|1482
7O80|1|A2|C|1483
7O80|1|A2|A|1484
7O80|1|A2|A|1485
7O80|1|A2|U|1486
7O80|1|A2|A|1487
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain Ab
- Ribosomal protein uS5
- Chain Ac
- 40S ribosomal protein S3
- Chain Ap
- Ribosomal protein S16
- Chain Aq
- 40S ribosomal protein eS17
- Chain At
- 40S ribosomal protein uS10
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