J3_7O80_019

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GCUAAGGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

7O80|1|B5|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|B5|G|1908
7O80|1|B5|A|1909
7O80|1|B5|C|1910
*
7O80|1|B5|G|1934
7O80|1|B5|C|1935
7O80|1|B5|U|1936
7O80|1|B5|A|1937
7O80|1|B5|A|1938
7O80|1|B5|G|1939
7O80|1|B5|G|1940
7O80|1|B5|A|1941
7O80|1|B5|G|1942
7O80|1|B5|U|1943
7O80|1|B5|G|1944
*
7O80|1|B5|C|1953
7O80|1|B5|U|1954
7O80|1|B5|C|1955
7O80|1|B5|A|1956
7O80|1|B5|C|1957

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

Ribosomal protein L12