J3_7O80_033

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

7O80|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|A2|C|223
7O80|1|A2|A|224
7O80|1|A2|G|225
7O80|1|A2|A|226
7O80|1|A2|U|227
7O80|1|A2|C|228
7O80|1|A2|A|229
7O80|1|A2|A|230
7O80|1|A2|A|231
7O80|1|A2|A|232
7O80|1|A2|C|233
7O80|1|A2|C|234
7O80|1|A2|A|235
7O80|1|A2|A|236
7O80|1|A2|C|237
7O80|1|A2|C|238
7O80|1|A2|C|239
*
7O80|1|A2|G|280
7O80|1|A2|G|281
7O80|1|A2|C|282
7O80|1|A2|G|283
7O80|1|A2|G|284
7O80|1|A2|C|285
7O80|1|A2|U|286
7O80|1|A2|U|287
7O80|1|A2|U|288
7O80|1|A2|G|289
*
7O80|1|A2|C|296
7O80|1|A2|U|297
7O80|1|A2|A|298
7O80|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11