J3_7O81_005

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7O81|1|A2|C|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|C|1095
7O81|1|A2|U|1096
7O81|1|A2|G|1097
*
7O81|1|A2|U|1137
7O81|1|A2|U|1138
7O81|1|A2|C|1139
7O81|1|A2|C|1140
7O81|1|A2|G|1141
*
7O81|1|A2|C|1148
7O81|1|A2|A|1149
7O81|1|A2|A|1150
7O81|1|A2|A|1151
7O81|1|A2|G|1152

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain AE

Ribosomal protein eS26

Chain AZ

40S ribosomal protein SA

Chain Au

Ribosomal protein eS21

Chain Av

Ribosomal protein S15a