J3_7O81_017

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

7O81|1|B5|A|1744, 7O81|1|B5|U|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O81_017 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.5205

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7O81|1|B5|U|1665
7O81|1|B5|U|1666
*
7O81|1|B5|A|1741
7O81|1|B5|G|1742
7O81|1|B5|A|1743
7O81|1|B5|A|1744
7O81|1|B5|G|1745
*
7O81|1|B5|C|1771
7O81|1|B5|G|1772
7O81|1|B5|U|1773
7O81|1|B5|G|1774
7O81|1|B5|G|1775
7O81|1|B5|A|1776

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BT

eL21

Chain Bb

60S ribosomal protein L29