J3_7O81_022

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

7O81|1|B5|U|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|A|2394
7O81|1|B5|G|2395
7O81|1|B5|A|2396
7O81|1|B5|U|2397
7O81|1|B5|G|2398
*
7O81|1|B5|C|2415
7O81|1|B5|A|2416
7O81|1|B5|G|2417
7O81|1|B5|U|2418
*
7O81|1|B5|A|2600
7O81|1|B5|G|2601
7O81|1|B5|G|2602
7O81|1|B5|G|2603
7O81|1|B5|U|2604
7O81|1|B5|G|2605
7O81|1|B5|U|2606
7O81|1|B5|A|2607
7O81|1|B5|A|2608
7O81|1|B5|A|2609
7O81|1|B5|U|2610

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27