3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGG*CUGAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O81_024 not in the Motif Atlas
Geometric match to J3_8VTW_006
Geometric discrepancy: 0.1386
The information below is about J3_8VTW_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.4
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

7O81|1|B5|C|3669
7O81|1|B5|G|3670
7O81|1|B5|G|3671
*
7O81|1|B5|C|3802
7O81|1|B5|U|3803
7O81|1|B5|G|3804
7O81|1|B5|A|3805
7O81|1|B5|C|3806
*
7O81|1|B5|G|3914
7O81|1|B5|G|3915
7O81|1|B5|A|3916
7O81|1|B5|C|3917
7O81|1|B5|A|3918
7O81|1|B5|G|3919

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BA
Ribosomal protein uL2
Chain BG
Ribosomal protein eL8
Chain BN
Ribosomal protein L15

Coloring options:


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