J3_7O81_024

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O81_024 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1386

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7O81|1|B5|C|3669
7O81|1|B5|G|3670
7O81|1|B5|G|3671
*
7O81|1|B5|C|3802
7O81|1|B5|U|3803
7O81|1|B5|G|3804
7O81|1|B5|A|3805
7O81|1|B5|C|3806
*
7O81|1|B5|G|3914
7O81|1|B5|G|3915
7O81|1|B5|A|3916
7O81|1|B5|C|3917
7O81|1|B5|A|3918
7O81|1|B5|G|3919

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BG

Ribosomal protein eL8

Chain BN

Ribosomal protein L15