J3_7O81_039
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7O81|1|B5|U|354, 7O81|1|B5|A|362, 7O81|1|B8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_039 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0704
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|B5|C|351
7O81|1|B5|G|352
7O81|1|B5|A|353
7O81|1|B5|U|354
7O81|1|B5|A|355
7O81|1|B5|G|356
7O81|1|B5|U|357
7O81|1|B5|C|358
7O81|1|B5|A|359
7O81|1|B5|A|360
7O81|1|B5|C|361
7O81|1|B5|A|362
7O81|1|B5|A|363
7O81|1|B5|G|364
7O81|1|B5|U|365
7O81|1|B5|A|366
7O81|1|B5|C|367
*
7O81|1|B5|G|374
7O81|1|B5|G|375
7O81|1|B5|A|376
7O81|1|B5|A|377
7O81|1|B5|A|378
7O81|1|B5|G|379
*
7O81|1|B8|C|21
7O81|1|B8|U|22
7O81|1|B8|C|23
7O81|1|B8|G|24
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BK
- Replicase polyprotein 1ab
- Chain BY
- Ribosomal protein L26
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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