3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
7O81|1|B5|U|354, 7O81|1|B5|A|362, 7O81|1|B8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7O81_039 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0704
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7O81|1|B5|C|351
7O81|1|B5|G|352
7O81|1|B5|A|353
7O81|1|B5|U|354
7O81|1|B5|A|355
7O81|1|B5|G|356
7O81|1|B5|U|357
7O81|1|B5|C|358
7O81|1|B5|A|359
7O81|1|B5|A|360
7O81|1|B5|C|361
7O81|1|B5|A|362
7O81|1|B5|A|363
7O81|1|B5|G|364
7O81|1|B5|U|365
7O81|1|B5|A|366
7O81|1|B5|C|367
*
7O81|1|B5|G|374
7O81|1|B5|G|375
7O81|1|B5|A|376
7O81|1|B5|A|377
7O81|1|B5|A|378
7O81|1|B5|G|379
*
7O81|1|B8|C|21
7O81|1|B8|U|22
7O81|1|B8|C|23
7O81|1|B8|G|24

Current chains

Chain B5
28S rRNA
Chain B8
5.8S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BK
Replicase polyprotein 1ab
Chain BY
Ribosomal protein L26
Chain Bj
Ribosomal protein L37
Chain Bl
eL39

Coloring options:


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