J3_7O81_040
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 7O81|1|B5|G|409, 7O81|1|B5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_040 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3083
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7O81|1|B5|U|380
7O81|1|B5|U|381
7O81|1|B5|G|382
7O81|1|B5|A|383
7O81|1|B5|A|384
7O81|1|B5|A|385
7O81|1|B5|A|386
7O81|1|B5|G|387
7O81|1|B5|A|388
7O81|1|B5|A|389
7O81|1|B5|C|390
*
7O81|1|B5|G|401
7O81|1|B5|A|402
7O81|1|B5|G|403
7O81|1|B5|U|404
7O81|1|B5|U|405
7O81|1|B5|C|406
7O81|1|B5|A|407
7O81|1|B5|A|408
7O81|1|B5|G|409
7O81|1|B5|A|410
7O81|1|B5|G|411
7O81|1|B5|G|412
7O81|1|B5|G|413
7O81|1|B5|C|414
7O81|1|B5|G|415
*
7O81|1|B8|C|19
7O81|1|B8|A|20
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain BY
- Ribosomal protein L26
- Chain Bl
- eL39
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