J3_7O81_042
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 7O81|1|B5|C|2313, 7O81|1|B5|A|2315, 7O81|1|B5|G|2318
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O81|1|B5|A|2294
7O81|1|B5|G|2295
7O81|1|B5|A|2296
7O81|1|B5|U|2297
7O81|1|B5|G|2298
7O81|1|B5|G|2299
*
7O81|1|B5|C|2308
7O81|1|B5|G|2309
7O81|1|B5|U|2310
7O81|1|B5|U|2311
7O81|1|B5|C|2312
7O81|1|B5|C|2313
7O81|1|B5|G|2314
7O81|1|B5|A|2315
7O81|1|B5|A|2316
7O81|1|B5|G|2317
7O81|1|B5|G|2318
7O81|1|B5|G|2319
*
7O81|1|B5|C|2344
7O81|1|B5|A|2345
7O81|1|B5|G|2346
7O81|1|B5|C|2347
7O81|1|B5|C|2348
7O81|1|B5|G|2349
7O81|1|B5|A|2350
7O81|1|B5|PSU|2351
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- Ribosomal protein uL2
- Chain BG
- Ribosomal protein eL8
- Chain BN
- Ribosomal protein L15
- Chain BX
- uL23
- Chain Bj
- Ribosomal protein L37
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