J3_7O81_043

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7O81_043 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1322

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7O81|1|B5|A|2441
7O81|1|B5|G|2442
7O81|1|B5|A|2443
7O81|1|B5|A|2444
7O81|1|B5|G|2445
*
7O81|1|B5|C|2580
7O81|1|B5|C|2581
*
7O81|1|B5|G|2585
7O81|1|B5|A|2586
7O81|1|B5|A|2587
7O81|1|B5|A|2588
7O81|1|B5|A|2589
7O81|1|B5|U|2590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain Bg

60S ribosomal protein L34

Chain Bp

eL43