J3_7O81_044
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 7O81|1|B5|C|4083, 7O81|1|B5|U|4120
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7O81_044 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0853
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7O81|1|B5|OMG|3974
7O81|1|B5|U|3975
7O81|1|B5|C|3976
*
7O81|1|B5|G|4077
7O81|1|B5|C|4078
7O81|1|B5|C|4079
7O81|1|B5|U|4080
7O81|1|B5|C|4081
7O81|1|B5|A|4082
7O81|1|B5|C|4083
7O81|1|B5|G|4084
7O81|1|B5|A|4085
7O81|1|B5|U|4086
7O81|1|B5|C|4087
7O81|1|B5|C|4088
*
7O81|1|B5|OMG|4116
7O81|1|B5|G|4117
7O81|1|B5|U|4118
7O81|1|B5|G|4119
7O81|1|B5|U|4120
7O81|1|B5|C|4121
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain BQ
- Ribosomal protein L18
- Chain BT
- eL21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bo
- eL42
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