J3_7O81_045

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7O81|1|B5|U|4621, 7O81|1|B5|A|4677, 7O81|1|B5|C|4679, 7O81|1|B5|A|4682, 7O81|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|G|4498
7O81|1|B5|U|4499
7O81|1|B5|U|4500
7O81|1|B5|G|4501
*
7O81|1|B5|C|4618
7O81|1|B5|C|4619
7O81|1|B5|U|4620
7O81|1|B5|U|4621
7O81|1|B5|C|4622
*
7O81|1|B5|G|4675
7O81|1|B5|C|4676
7O81|1|B5|A|4677
7O81|1|B5|C|4678
7O81|1|B5|C|4679
7O81|1|B5|G|4680
7O81|1|B5|C|4681
7O81|1|B5|A|4682
7O81|1|B5|C|4683
7O81|1|B5|G|4684
7O81|1|B5|U|4685
7O81|1|B5|U|4686
7O81|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

Ribosomal protein L14

Chain BO

Ribosomal protein L13a

Chain Bf

eL33