3D structure

PDB id
7OBR (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC-SRP early complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGGG*CGCUUCUGGCGCCAAG*CGAC
Length
24 nucleotides
Bulged bases
7OBR|1|5|U|4117, 7OBR|1|5|U|4118, 7OBR|1|5|C|4119, 7OBR|1|5|U|4120, 7OBR|1|5|G|4121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OBR_017 not in the Motif Atlas
Homologous match to J3_8C3A_009
Geometric discrepancy: 0.4248
The information below is about J3_8C3A_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_02167.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

7OBR|1|5|G|4091
7OBR|1|5|G|4092
7OBR|1|5|G|4093
7OBR|1|5|G|4094
*
7OBR|1|5|C|4114
7OBR|1|5|G|4115
7OBR|1|5|C|4116
7OBR|1|5|U|4117
7OBR|1|5|U|4118
7OBR|1|5|C|4119
7OBR|1|5|U|4120
7OBR|1|5|G|4121
7OBR|1|5|G|4122
7OBR|1|5|C|4123
7OBR|1|5|G|4124
7OBR|1|5|C|4125
7OBR|1|5|C|4126
7OBR|1|5|A|4127
7OBR|1|5|A|4128
7OBR|1|5|G|4129
*
7OBR|1|5|C|4155
7OBR|1|5|G|4156
7OBR|1|5|A|4157
7OBR|1|5|C|4158

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
60S ribosomal protein L8
Chain G
60S ribosomal protein L7a
Chain X
uL23
Chain Z
60S ribosomal protein L27
Chain c
60S ribosomal protein L30
Chain g
60S ribosomal protein L34
Chain p
eL43

Coloring options:


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