J3_7ODE_003

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7ODE|1|I|U|686, 7ODE|1|I|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ODE_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.1953

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7ODE|1|I|U|683
7ODE|1|I|G|684
7ODE|1|I|A|685
7ODE|1|I|U|686
7ODE|1|I|C|687
7ODE|1|I|U|688
7ODE|1|I|A|689
*
7ODE|1|I|U|773
7ODE|1|I|G|774
7ODE|1|I|G|775
*
7ODE|1|I|C|791
7ODE|1|I|A|792
7ODE|1|I|A|793
7ODE|1|I|A|794

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34