J3_7ODE_006

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7ODE|1|I|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ODE_006 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.1475

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7ODE|1|I|C|1306
7ODE|1|I|A|1307
7ODE|1|I|A|1308
7ODE|1|I|G|1309
*
7ODE|1|I|C|1605
7ODE|1|I|C|1606
7ODE|1|I|C|1607
7ODE|1|I|A|1608
7ODE|1|I|A|1609
7ODE|1|I|A|1610
7ODE|1|I|C|1611
*
7ODE|1|I|G|1620
7ODE|1|I|U|1621
7ODE|1|I|G|1622

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34