J3_7ODE_009
3D structure
- PDB id
- 7ODE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome LiCl core particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 7ODE|1|I|U|2833, 7ODE|1|I|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ODE_009 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1378
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7ODE|1|I|G|2812
7ODE|1|I|A|2813
7ODE|1|I|A|2814
7ODE|1|I|C|2815
*
7ODE|1|I|G|2831
7ODE|1|I|U|2832
7ODE|1|I|U|2833
7ODE|1|I|G|2834
7ODE|1|I|A|2835
7ODE|1|I|U|2836
*
7ODE|1|I|A|2882
7ODE|1|I|A|2883
7ODE|1|I|U|2884
7ODE|1|I|G|2885
7ODE|1|I|A|2886
7ODE|1|I|A|2887
7ODE|1|I|C|2888
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain V
- 50S ribosomal protein L17
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
Coloring options: