J3_7ODE_011
3D structure
- PDB id
- 7ODE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome LiCl core particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7ODE|1|I|U|34, 7ODE|1|I|U|448, 7ODE|1|I|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ODE_011 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0653
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7ODE|1|I|C|32
7ODE|1|I|C|33
7ODE|1|I|U|34
7ODE|1|I|G|35
*
7ODE|1|I|C|445
7ODE|1|I|G|446
7ODE|1|I|A|447
7ODE|1|I|U|448
7ODE|1|I|A|449
7ODE|1|I|G|450
7ODE|1|I|U|451
7ODE|1|I|G|452
7ODE|1|I|A|453
7ODE|1|I|A|454
7ODE|1|I|C|455
7ODE|1|I|C|456
7ODE|1|I|A|457
7ODE|1|I|G|458
7ODE|1|I|U|459
7ODE|1|I|A|460
7ODE|1|I|C|461
*
7ODE|1|I|G|468
7ODE|1|I|G|469
7ODE|1|I|A|470
7ODE|1|I|A|471
7ODE|1|I|A|472
7ODE|1|I|G|473
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain Y
- 50S ribosomal protein L20
- Chain b
- 50S ribosomal protein L23
- Chain k
- 50S ribosomal protein L34
Coloring options: