J3_7ODS_006
3D structure
- PDB id
- 7ODS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State B of the human mitoribosomal large subunit assembly intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 7ODS|1|A|A|3005, 7ODS|1|A|U|3006, 7ODS|1|A|A|3051
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ODS_006 not in the Motif Atlas
- Homologous match to J3_7RQB_012
- Geometric discrepancy: 0.1256
- The information below is about J3_7RQB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.3
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7ODS|1|A|C|3004
7ODS|1|A|A|3005
7ODS|1|A|U|3006
7ODS|1|A|C|3007
*
7ODS|1|A|G|3032
7ODS|1|A|U|3033
7ODS|1|A|U|3034
*
7ODS|1|A|A|3048
7ODS|1|A|U|3049
7ODS|1|A|U|3050
7ODS|1|A|A|3051
7ODS|1|A|A|3052
7ODS|1|A|A|3053
7ODS|1|A|G|3054
Current chains
- Chain A
- 16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA
Nearby chains
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
- Chain z
- rRNA methyltransferase 2, mitochondrial
Coloring options: