J3_7OF1_011

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUG*CUUAUU*AAGACAUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OF1_011 not in the Motif Atlas

Homologous match to J3_8P9A_059

Geometric discrepancy: 0.5665

The information below is about J3_8P9A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84052.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7OF1|1|1|C|2431
7OF1|1|1|A|2432
7OF1|1|1|U|2433
7OF1|1|1|U|2434
7OF1|1|1|G|2435
*
7OF1|1|1|C|2512
7OF1|1|1|U|2513
7OF1|1|1|U|2514
7OF1|1|1|A|2515
7OF1|1|1|U|2516
7OF1|1|1|U|2517
*
7OF1|1|1|A|2590
7OF1|1|1|A|2591
7OF1|1|1|G|2592
7OF1|1|1|A|2593
7OF1|1|1|C|2594
7OF1|1|1|A|2595
7OF1|1|1|U|2596
7OF1|1|1|G|2598

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-A