3D structure

PDB id
7OH3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
7OH3|1|1|A|398, 7OH3|1|1|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OH3_021 not in the Motif Atlas
Homologous match to J3_8P9A_047
Geometric discrepancy: 0.1315
The information below is about J3_8P9A_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7OH3|1|1|A|369
7OH3|1|1|U|370
7OH3|1|1|G|371
7OH3|1|1|A|372
7OH3|1|1|A|373
7OH3|1|1|A|374
7OH3|1|1|A|375
7OH3|1|1|G|376
7OH3|1|1|A|377
7OH3|1|1|A|378
7OH3|1|1|C|379
*
7OH3|1|1|G|390
7OH3|1|1|A|391
7OH3|1|1|G|392
7OH3|1|1|U|393
7OH3|1|1|G|394
7OH3|1|1|A|395
7OH3|1|1|A|396
7OH3|1|1|A|397
7OH3|1|1|A|398
7OH3|1|1|A|399
7OH3|1|1|G|400
7OH3|1|1|U|401
7OH3|1|1|A|402
7OH3|1|1|C|403
7OH3|1|1|G|404
*
7OH3|1|2|C|19
7OH3|1|2|U|20

Current chains

Chain 1
25S rRNA
Chain 2
5.8S rRNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain P
60S ribosomal protein L17-A
Chain Y
60S ribosomal protein L26-A
Chain l
60S ribosomal protein L39

Coloring options:


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