J3_7OHP_009

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

7OHP|1|2|U|60, 7OHP|1|2|C|62

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OHP_009 not in the Motif Atlas

Homologous match to J3_8CRE_027

Geometric discrepancy: 0.1316

The information below is about J3_8CRE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

7OHP|1|2|A|44
7OHP|1|2|C|45
*
7OHP|1|2|G|58
7OHP|1|2|A|59
7OHP|1|2|U|60
7OHP|1|2|A|61
7OHP|1|2|C|62
7OHP|1|2|G|63
7OHP|1|2|U|64
*
7OHP|1|2|A|96
7OHP|1|2|A|97
7OHP|1|2|U|98
7OHP|1|2|C|99
7OHP|1|2|U|100

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A