J3_7OHQ_021
3D structure
- PDB id
- 7OHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 7OHQ|1|1|A|398, 7OHQ|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OHQ_021 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.1245
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7OHQ|1|1|A|369
7OHQ|1|1|U|370
7OHQ|1|1|G|371
7OHQ|1|1|A|372
7OHQ|1|1|A|373
7OHQ|1|1|A|374
7OHQ|1|1|A|375
7OHQ|1|1|G|376
7OHQ|1|1|A|377
7OHQ|1|1|A|378
7OHQ|1|1|C|379
*
7OHQ|1|1|G|390
7OHQ|1|1|A|391
7OHQ|1|1|G|392
7OHQ|1|1|U|393
7OHQ|1|1|G|394
7OHQ|1|1|A|395
7OHQ|1|1|A|396
7OHQ|1|1|A|397
7OHQ|1|1|A|398
7OHQ|1|1|A|399
7OHQ|1|1|G|400
7OHQ|1|1|U|401
7OHQ|1|1|A|402
7OHQ|1|1|C|403
7OHQ|1|1|G|404
*
7OHQ|1|2|C|19
7OHQ|1|2|U|20
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
Coloring options: