J3_7OHT_007
3D structure
- PDB id
- 7OHT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 7OHT|1|1|A|3172, 7OHT|1|1|G|3173, 7OHT|1|1|A|3215, 7OHT|1|1|G|3216, 7OHT|1|1|C|3217, 7OHT|1|1|A|3218, 7OHT|1|1|G|3219, 7OHT|1|1|A|3268, 7OHT|1|1|U|3270, 7OHT|1|1|C|3272, 7OHT|1|1|A|3273, 7OHT|1|1|A|3274, 7OHT|1|1|U|3275, 7OHT|1|1|G|3276, 7OHT|1|1|U|3277, 7OHT|1|1|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OHT_007 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.1939
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7OHT|1|1|U|3171
7OHT|1|1|A|3172
7OHT|1|1|G|3173
7OHT|1|1|A|3174
7OHT|1|1|U|3175
7OHT|1|1|G|3176
*
7OHT|1|1|C|3212
7OHT|1|1|A|3213
7OHT|1|1|U|3214
7OHT|1|1|A|3215
7OHT|1|1|G|3216
7OHT|1|1|C|3217
7OHT|1|1|A|3218
7OHT|1|1|G|3219
7OHT|1|1|G|3220
*
7OHT|1|1|C|3265
7OHT|1|1|G|3266
7OHT|1|1|A|3267
7OHT|1|1|A|3268
7OHT|1|1|U|3269
7OHT|1|1|U|3270
7OHT|1|1|G|3271
7OHT|1|1|C|3272
7OHT|1|1|A|3273
7OHT|1|1|A|3274
7OHT|1|1|U|3275
7OHT|1|1|G|3276
7OHT|1|1|U|3277
7OHT|1|1|C|3278
7OHT|1|1|A|3279
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain f
- 60S ribosomal protein L33-A
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