J3_7OHU_003

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGACAUG*UGGG*CAUAAUG

Length

19 nucleotides

Bulged bases

7OHU|1|1|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHU|1|1|C|435
7OHU|1|1|A|436
7OHU|1|1|G|437
7OHU|1|1|A|438
7OHU|1|1|C|439
7OHU|1|1|A|440
7OHU|1|1|U|441
7OHU|1|1|G|442
*
7OHU|1|1|U|492
7OHU|1|1|G|493
7OHU|1|1|G|494
7OHU|1|1|G|495
*
7OHU|1|1|C|618
7OHU|1|1|A|619
7OHU|1|1|U|620
7OHU|1|1|A|621
7OHU|1|1|A|622
7OHU|1|1|U|623
7OHU|1|1|G|624

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A