J3_7OHU_012

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

7OHU|1|1|A|3172, 7OHU|1|1|G|3173, 7OHU|1|1|A|3215, 7OHU|1|1|G|3216, 7OHU|1|1|C|3217, 7OHU|1|1|A|3218, 7OHU|1|1|G|3219, 7OHU|1|1|A|3268, 7OHU|1|1|U|3270, 7OHU|1|1|C|3272, 7OHU|1|1|G|3276, 7OHU|1|1|C|3278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OHU_012 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.2013

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7OHU|1|1|U|3171
7OHU|1|1|A|3172
7OHU|1|1|G|3173
7OHU|1|1|A|3174
7OHU|1|1|U|3175
7OHU|1|1|G|3176
*
7OHU|1|1|C|3212
7OHU|1|1|A|3213
7OHU|1|1|U|3214
7OHU|1|1|A|3215
7OHU|1|1|G|3216
7OHU|1|1|C|3217
7OHU|1|1|A|3218
7OHU|1|1|G|3219
7OHU|1|1|G|3220
*
7OHU|1|1|C|3265
7OHU|1|1|G|3266
7OHU|1|1|A|3267
7OHU|1|1|A|3268
7OHU|1|1|U|3269
7OHU|1|1|U|3270
7OHU|1|1|G|3271
7OHU|1|1|C|3272
7OHU|1|1|A|3273
7OHU|1|1|A|3274
7OHU|1|1|U|3275
7OHU|1|1|G|3276
7OHU|1|1|U|3277
7OHU|1|1|C|3278
7OHU|1|1|A|3279

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain M

60S ribosomal protein L14-A

Chain O

60S ribosomal protein L16-A

Chain f

60S ribosomal protein L33-A