J3_7OIC_003

3D structure

PDB id

7OIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OIC_003 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1251

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7OIC|1|A|C|260
7OIC|1|A|A|261
7OIC|1|A|G|262
*
7OIC|1|A|C|272
7OIC|1|A|A|273
7OIC|1|A|C|274
7OIC|1|A|A|275
7OIC|1|A|C|276
*
7OIC|1|A|G|300
7OIC|1|A|A|301
7OIC|1|A|A|302
7OIC|1|A|G|303

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial