7OIC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OIC_001 | 1/A/52:59 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_7OIC_002 | 1/A/76:82 | No text annotation | geometric HL_5J7L_141 NA | |
| HL_7OIC_003 | 1/A/116:121 | GNRA | homologous HL_7RQB_015 NA | |
| HL_7OIC_004 | 1/A/161:169 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_7OIC_005 | 1/A/177:186 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_7OIC_006 | 1/A/214:219 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7OIC_007 | 1/A/264:270 | No text annotation | ||
| HL_7OIC_008 | 1/A/284:293 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_7OIC_009 | 1/A/318:326 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_7OIC_010 | 1/A/365:370 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_7OIC_012 | 1/A/437:444 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_7OIC_013 | 1/A/459:466 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_7OIC_041 | 1/A/504:516 | No text annotation | ||
| HL_7OIC_014 | 1/A/506:515 | No text annotation | ||
| HL_7OIC_015 | 1/A/532:539 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_7OIC_016 | 1/A/609:616 | No text annotation | geometric HL_8C3A_018 NA | |
| HL_7OIC_017 | 1/A/649:654 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_7OIC_019 | 1/A/730:733 | Mini UNCG | geometric HL_7A0S_039 HL_90436.1 | |
| HL_7OIC_020 | 1/A/758:765 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_7OIC_021 | 1/A/827:837 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_7OIC_022 | 1/A/848:862 | No text annotation | ||
| HL_7OIC_024 | 1/A/1020:1029 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_7OIC_026 | 1/A/1142:1150 | No text annotation | homologous HL_7A0S_052 HL_11974.1 | |
| HL_7OIC_027 | 1/A/1158:1170 | No text annotation | ||
| HL_7OIC_028 | 1/A/1192:1200 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_7OIC_029 | 1/A/1232:1237 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_7OIC_030 | 1/A/1288:1296 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_7OIC_031 | 1/A/1345:1352 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_7OIC_032 | 1/A/1368:1374 | No text annotation | homologous HL_5J7L_195 NA | |
| HL_7OIC_033 | 1/A/1411:1416 | GNRA | homologous HL_7RQB_063 NA | |
| HL_7OIC_034 | 1/A/1456:1461 | GNRA | geometric HL_3LQX_001 HL_34789.1 | |
| HL_7OIC_035 | 1/A/1484:1489 | No text annotation | geometric HL_4WRT_001 HL_19413.1 | |
| HL_7OIC_036 | 1/A/1506:1523 | No text annotation | geometric HL_7A0S_074 NA | |
| HL_7OIC_037 | 1/A/1546:1554 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_7OIC_039 | 1/B/1630:1638 | tRNA anticodon loop | geometric HL_3WFS_002 HL_81376.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OIC_011 | Externally structured | ||
| HL_7OIC_040 | No text annotation | ||
| HL_7OIC_018 | No text annotation | ||
| HL_7OIC_023 | No text annotation | ||
| HL_7OIC_025 | No text annotation | ||
| HL_7OIC_038 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OIC_002 | 1/A/12:13, 1/A/98:100 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7OIC_003 | 1/A/69:75, 1/A/83:88 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_7OIC_004 | 1/A/175:177, 1/A/186:188 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_7OIC_005 | 1/A/207:209, 1/A/225:227 | Isolated non-canonical cWW pair | geometric IL_3SZX_001 IL_01003.1 | |
| IL_7OIC_006 | 1/A/210:213, 1/A/220:224 | No text annotation | ||
| IL_7OIC_007 | 1/A/234:236, 1/A/346:348 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.1 | |
| IL_7OIC_008 | 1/A/236:240, 1/A/339:346 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_7OIC_009 | 1/A/243:245, 1/A/334:336 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_7OIC_010 | 1/A/255:257, 1/A/307:309 | Isolated cWH basepair | geometric IL_2H1M_003 IL_10892.1 | |
| IL_7OIC_011 | 1/A/259:260, 1/A/303:305 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_7OIC_012 | 1/A/278:281, 1/A/296:298 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_36931.1 | |
| IL_7OIC_013 | 1/A/315:317, 1/A/327:331 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_7OIC_014 | 1/A/376:378, 1/A/421:424 | No text annotation | geometric IL_4N0T_004 IL_32983.1 | |
| IL_7OIC_015 | 1/A/387:393, 1/A/406:412 | No text annotation | ||
| IL_7OIC_016 | 1/A/455:457, 1/A/468:470 | No text annotation | ||
| IL_7OIC_017 | 1/A/475:477, 1/A/584:585 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_7OIC_018 | 1/A/479:483, 1/A/578:582 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_7OIC_019 | 1/A/498:500, 1/A/520:522 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_7OIC_020 | 1/A/500:503, 1/A/517:520 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_7OIC_021 | 1/A/503:506, 1/A/515:517 | No text annotation | ||
| IL_7OIC_022 | 1/A/527:530, 1/A/541:542 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_7OIC_023 | 1/A/636:643, 1/A/1004:1010 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7OIC_024 | 1/A/660:663, 1/A/771:777 | No text annotation | ||
| IL_7OIC_025 | 1/A/707:711, 1/A/741:749 | No text annotation | ||
| IL_7OIC_053 | 1/A/714:730, 1/A/733:738 | No text annotation | ||
| IL_7OIC_026 | 1/A/786:791, 1/A/996:998 | No text annotation | ||
| IL_7OIC_027 | 1/A/797:799, 1/A/988:990 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_7OIC_028 | 1/A/800:803, 1/A/986:987 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.1 | |
| IL_7OIC_054 | 1/A/800:808, 1/A/983:987 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_7OIC_029 | 1/A/803:808, 1/A/983:986 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_7OIC_030 | 1/A/808:817, 1/A/978:983 | No text annotation | ||
| IL_7OIC_031 | 1/A/820:821, 1/A/973:975 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_7OIC_032 | 1/A/1042:1045, 1/A/1434:1436 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
| IL_7OIC_033 | 1/A/1047:1049, 1/A/1429:1432 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_7OIC_034 | 1/A/1060:1062, 1/A/1259:1260 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_7OIC_035 | 1/A/1063:1064, 1/A/1255:1258 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_7OIC_036 | 1/A/1074:1076, 1/A/1132:1133 | Minor groove platform | geometric IL_7A0S_003 IL_34520.1 | |
| IL_7OIC_038 | 1/A/1186:1190, 1/A/1202:1206 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_7OIC_039 | 1/A/1270:1271, 1/A/1315:1317 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_7OIC_040 | 1/A/1271:1272, 1/A/1313:1315 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_7OIC_041 | 1/A/1273:1276, 1/A/1310:1312 | Major groove platform with extra pair | homologous IL_7RQB_093 NA | |
| IL_7OIC_042 | 1/A/1276:1278, 1/A/1306:1310 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_36931.1 | |
| IL_7OIC_043 | 1/A/1283:1287, 1/A/1297:1301 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_7OIC_044 | 1/A/1324:1325, 1/A/1397:1399 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_7OIC_045 | 1/A/1327:1329, 1/A/1391:1395 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_7OIC_046 | 1/A/1329:1330, 1/A/1388:1391 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_7OIC_047 | 1/A/1338:1340, 1/A/1357:1361 | No text annotation | ||
| IL_7OIC_048 | 1/A/1408:1409, 1/A/1418:1420 | Single bulged A | homologous IL_5J7L_344 NA | |
| IL_7OIC_049 | 1/A/1445:1447, 1/A/1469:1471 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_7OIC_050 | 1/A/1449:1456, 1/A/1461:1467 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7OIC_051 | 1/A/1478:1482, 1/A/1491:1493 | C-loop | geometric IL_4JRC_003 IL_63596.12 | |
| IL_7OIC_052 | 1/B/1627:1629, 1/B/1639:1641 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_01003.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OIC_001 | No text annotation | ||
| IL_7OIC_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OIC_001 | 1/A/8:11, 1/A/101:115, 1/A/122:127 | No text annotation | ||
| J3_7OIC_002 | 1/A/245:251, 1/A/313:315, 1/A/331:334 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_7OIC_003 | 1/A/260:262, 1/A/272:276, 1/A/300:303 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_7OIC_004 | 1/A/666:673, 1/A/753:757, 1/A/766:768 | No text annotation | ||
| J3_7OIC_005 | 1/A/673:675, 1/A/698:705, 1/A/751:753 | No text annotation | ||
| J3_7OIC_007 | 1/A/1176:1178, 1/A/1220:1230, 1/A/1239:1245 | No text annotation | ||
| J3_7OIC_006 | 1/A/1334:1337, 1/A/1362:1364, 1/A/1378:1384 | No text annotation | homologous J3_7RQB_012 NA | |
| J4_7OIC_001 | 1/A/644:647, 1/A/656:657, 1/A/780:783, 1/A/1001:1003 | No text annotation | ||
| J4_7OIC_002 | 1/A/666:675, 1/A/698:705, 1/A/751:757, 1/A/766:768 | No text annotation | ||
| J4_7OIC_003 | 1/A/822:826, 1/A/838:843, 1/A/867:872, 1/A/967:972 | No text annotation | ||
| J5_7OIC_001 | 1/A/157:159, 1/A/171:175, 1/A/188:190, 1/A/635:636, 1/A/1010:1011 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_7OIC_002 | 1/A/195:205, 1/A/229:233, 1/A/349:352, 1/A/601:605, 1/A/620:630 | No text annotation | ||
| J5_7OIC_003 | 1/A/1050:1057, 1/A/1263:1270, 1/A/1317:1324, 1/A/1399:1405, 1/A/1423:1428 | No text annotation | ||
| J5_7OIC_004 | 1/A/1067:1070, 1/A/1137:1140, 1/A/1152:1153, 1/A/1175:1176, 1/A/1245:1252 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_7OIC_001 | 1/A/357:362, 1/A/373:374, 1/A/426:428, 1/A/453:455, 1/A/470:473, 1/A/587:596 | No text annotation | ||
| J6_7OIC_002 | 1/A/1067:1070, 1/A/1137:1140, 1/A/1152:1153, 1/A/1175:1178, 1/A/1220:1230, 1/A/1239:1252 | No text annotation |
Problematic loops
No problematic loops
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