J3_7OIE_002
3D structure
- PDB id
- 7OIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 7OIE|1|A|G|248, 7OIE|1|A|G|332, 7OIE|1|A|A|333
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OIE_002 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1428
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
7OIE|1|A|C|245
7OIE|1|A|G|246
7OIE|1|A|A|247
7OIE|1|A|G|248
7OIE|1|A|C|249
7OIE|1|A|U|250
7OIE|1|A|A|251
*
7OIE|1|A|U|313
7OIE|1|A|A|314
7OIE|1|A|G|315
*
7OIE|1|A|C|331
7OIE|1|A|G|332
7OIE|1|A|A|333
7OIE|1|A|G|334
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain 9
- 39S ribosomal protein L41, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
Coloring options: