3D structure

PDB id
7OIG (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
7OIG|1|1|U|34, 7OIG|1|1|U|448, 7OIG|1|1|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OIG_028 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0633
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

7OIG|1|1|C|32
7OIG|1|1|C|33
7OIG|1|1|U|34
7OIG|1|1|G|35
*
7OIG|1|1|C|445
7OIG|1|1|G|446
7OIG|1|1|A|447
7OIG|1|1|U|448
7OIG|1|1|A|449
7OIG|1|1|G|450
7OIG|1|1|U|451
7OIG|1|1|G|452
7OIG|1|1|A|453
7OIG|1|1|A|454
7OIG|1|1|C|455
7OIG|1|1|C|456
7OIG|1|1|A|457
7OIG|1|1|G|458
7OIG|1|1|U|459
7OIG|1|1|A|460
7OIG|1|1|C|461
*
7OIG|1|1|G|468
7OIG|1|1|G|469
7OIG|1|1|A|470
7OIG|1|1|A|471
7OIG|1|1|A|472
7OIG|1|1|G|473

Current chains

Chain 1
23S rRNA

Nearby chains

Chain B
CspA transcriptional activator
Chain E
50S ribosomal protein L4
Chain P
50S ribosomal protein L20
Chain S
50S ribosomal protein L23
Chain c
50S ribosomal protein L34

Coloring options:


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