3D structure

PDB id
7OIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
7OIZ|1|a|U|2833, 7OIZ|1|a|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OIZ_025 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.144
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7OIZ|1|a|G|2812
7OIZ|1|a|A|2813
7OIZ|1|a|A|2814
7OIZ|1|a|C|2815
*
7OIZ|1|a|G|2831
7OIZ|1|a|U|2832
7OIZ|1|a|U|2833
7OIZ|1|a|G|2834
7OIZ|1|a|A|2835
7OIZ|1|a|U|2836
*
7OIZ|1|a|A|2882
7OIZ|1|a|A|2883
7OIZ|1|a|U|2884
7OIZ|1|a|G|2885
7OIZ|1|a|A|2886
7OIZ|1|a|A|2887
7OIZ|1|a|C|2888

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain m
50S ribosomal protein L17
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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