3D structure

PDB id
7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OJ0_008 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1549
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

7OJ0|1|A|C|990
7OJ0|1|A|U|991
7OJ0|1|A|U|992
7OJ0|1|A|G|993
*
7OJ0|1|A|C|1045
7OJ0|1|A|A|1046
7OJ0|1|A|G|1047
*
7OJ0|1|A|C|1210
7OJ0|1|A|U|1211
7OJ0|1|A|U|1212
7OJ0|1|A|A|1213
7OJ0|1|A|C|1214
7OJ0|1|A|G|1215

Current chains

Chain A
16S rRNA

Nearby chains

Chain 8
Peptide chain release factor RF2
Chain N
30S ribosomal protein S14

Coloring options:


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