3D structure

PDB id
7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
7OJ0|1|a|A|504, 7OJ0|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OJ0_033 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.087
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7OJ0|1|a|G|30
7OJ0|1|a|C|31
*
7OJ0|1|a|G|474
7OJ0|1|a|C|475
7OJ0|1|a|G|476
7OJ0|1|a|A|477
7OJ0|1|a|A|478
7OJ0|1|a|A|479
7OJ0|1|a|A|480
7OJ0|1|a|G|481
7OJ0|1|a|A|482
7OJ0|1|a|A|483
7OJ0|1|a|C|484
*
7OJ0|1|a|G|496
7OJ0|1|a|A|497
7OJ0|1|a|G|498
7OJ0|1|a|U|499
7OJ0|1|a|G|500
7OJ0|1|a|A|501
7OJ0|1|a|A|502
7OJ0|1|a|A|503
7OJ0|1|a|A|504
7OJ0|1|a|A|505
7OJ0|1|a|G|506
7OJ0|1|a|A|507
7OJ0|1|a|A|508
7OJ0|1|a|C|509
7OJ0|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L20
Chain r
50S ribosomal protein L22
Chain t
50S ribosomal protein L24

Coloring options:


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