J3_7OLC_006

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLC_006 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2558

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7OLC|1|1|G|1213
7OLC|1|1|A|1214
7OLC|1|1|C|1215
*
7OLC|1|1|G|1239
7OLC|1|1|C|1240
7OLC|1|1|U|1241
7OLC|1|1|A|1242
7OLC|1|1|A|1243
7OLC|1|1|G|1244
7OLC|1|1|G|1245
*
7OLC|1|1|C|1260
7OLC|1|1|A|1261
7OLC|1|1|C|1262

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein

Chain Ls

60S acidic ribosomal protein P0