J3_7OLC_024
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLC_024 not in the Motif Atlas
- Geometric match to J3_4V88_039
- Geometric discrepancy: 0.2152
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7OLC|1|2|U|1280
7OLC|1|2|C|1281
7OLC|1|2|U|1282
7OLC|1|2|U|1283
7OLC|1|2|A|1284
7OLC|1|2|G|1285
*
7OLC|1|2|C|1324
7OLC|1|2|G|1325
7OLC|1|2|A|1326
7OLC|1|2|G|1327
7OLC|1|2|A|1328
7OLC|1|2|C|1329
*
7OLC|1|2|G|1415
7OLC|1|2|C|1416
7OLC|1|2|A|1417
7OLC|1|2|A|1418
7OLC|1|2|U|1419
7OLC|1|2|A|1420
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2-like protein
- Chain SD
- 40S ribosomal protein S3-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SR
- 40S ribosomal protein S17-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain Sd
- uS14
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