J3_7OLC_025

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLC_025 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1261

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OLC|1|2|U|1290
7OLC|1|2|G|1291
*
7OLC|1|2|U|1300
7OLC|1|2|G|1301
7OLC|1|2|U|1302
7OLC|1|2|C|1303
*
7OLC|1|2|G|1315
7OLC|1|2|A|1316
7OLC|1|2|U|1317
7OLC|1|2|A|1318
7OLC|1|2|A|1319

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S0

Chain SC

40S ribosomal protein S2-like protein

Chain SR

40S ribosomal protein S17-like protein