J3_7OLC_046

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7OLC|1|2|A|46, 7OLC|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLC_046 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1223

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OLC|1|2|A|41
7OLC|1|2|G|42
7OLC|1|2|A|43
7OLC|1|2|U|44
7OLC|1|2|U|45
7OLC|1|2|A|46
7OLC|1|2|A|47
7OLC|1|2|G|48
*
7OLC|1|2|C|428
7OLC|1|2|G|429
7OLC|1|2|C|430
7OLC|1|2|G|431
7OLC|1|2|C|432
7OLC|1|2|A|433
7OLC|1|2|A|434
7OLC|1|2|A|435
7OLC|1|2|U|436
*
7OLC|1|2|A|461
7OLC|1|2|G|462
7OLC|1|2|U|463

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein s23-like protein