J3_7OLC_052
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 7OLC|1|2|U|1409, 7OLC|1|2|U|1410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLC_052 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1474
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OLC|1|2|A|1333
7OLC|1|2|A|1334
7OLC|1|2|C|1335
*
7OLC|1|2|G|1383
7OLC|1|2|G|1384
7OLC|1|2|A|1385
7OLC|1|2|C|1386
7OLC|1|2|U|1387
7OLC|1|2|A|1388
*
7OLC|1|2|U|1403
7OLC|1|2|G|1404
7OLC|1|2|G|1405
7OLC|1|2|A|1406
7OLC|1|2|A|1407
7OLC|1|2|G|1408
7OLC|1|2|U|1409
7OLC|1|2|U|1410
7OLC|1|2|U|1411
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Putative guanine nucleotide-binding protein
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SR
- 40S ribosomal protein S17-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
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