J3_7OLD_003
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGGACCGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 7OLD|1|1|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_003 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1288
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|1|U|493
7OLD|1|1|C|494
*
7OLD|1|1|G|579
7OLD|1|1|A|580
7OLD|1|1|G|581
7OLD|1|1|G|582
7OLD|1|1|A|583
7OLD|1|1|C|584
7OLD|1|1|C|585
7OLD|1|1|G|586
7OLD|1|1|C|587
7OLD|1|1|G|588
*
7OLD|1|1|C|594
7OLD|1|1|A|595
7OLD|1|1|A|596
7OLD|1|1|G|597
7OLD|1|1|G|598
7OLD|1|1|A|599
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LE
- 60S ribosomal protein L6
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
Coloring options: