J3_7OLD_006

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLD_006 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.1957

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7OLD|1|1|G|1213
7OLD|1|1|A|1214
7OLD|1|1|C|1215
*
7OLD|1|1|G|1239
7OLD|1|1|C|1240
7OLD|1|1|U|1241
7OLD|1|1|A|1242
7OLD|1|1|A|1243
7OLD|1|1|G|1244
7OLD|1|1|G|1245
*
7OLD|1|1|C|1260
7OLD|1|1|A|1261
7OLD|1|1|C|1262

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein

Chain Ls

60S acidic ribosomal protein P0