J3_7OLD_016

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLD_016 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1533

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OLD|1|2|A|41
7OLD|1|2|G|42
*
7OLD|1|2|C|430
7OLD|1|2|G|431
7OLD|1|2|C|432
7OLD|1|2|A|433
7OLD|1|2|A|434
7OLD|1|2|A|435
7OLD|1|2|U|436
*
7OLD|1|2|A|461
7OLD|1|2|G|462
7OLD|1|2|U|463

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

Elongation factor 2

Chain SX

40S ribosomal protein s23-like protein