J3_7OLD_020
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUA*UUACG*CAAAA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_020 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1753
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|2|U|1035
7OLD|1|2|U|1036
7OLD|1|2|A|1037
*
7OLD|1|2|U|1076
7OLD|1|2|U|1077
7OLD|1|2|A|1078
7OLD|1|2|C|1079
7OLD|1|2|G|1080
*
7OLD|1|2|C|1087
7OLD|1|2|A|1088
7OLD|1|2|A|1089
7OLD|1|2|A|1090
7OLD|1|2|A|1091
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein S0
- Chain SV
- 40S ribosomal protein S21-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- Ribosomal protein s27-like protein
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