J3_7OLD_028
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 7OLD|1|2|U|1469, 7OLD|1|2|G|1535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_028 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2708
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OLD|1|2|C|1466
7OLD|1|2|A|1467
7OLD|1|2|C|1468
7OLD|1|2|U|1469
7OLD|1|2|G|1470
*
7OLD|1|2|C|1529
7OLD|1|2|G|1530
7OLD|1|2|U|1531
7OLD|1|2|G|1532
7OLD|1|2|C|1533
7OLD|1|2|U|1534
7OLD|1|2|G|1535
7OLD|1|2|G|1536
*
7OLD|1|2|C|1567
7OLD|1|2|G|1568
7OLD|1|2|A|1569
7OLD|1|2|G|1570
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SS
- Putative ribosomal protein
- Chain ST
- 40S ribosomal protein S19-like protein
- Chain SZ
- 40S ribosomal protein S25
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