J3_7OLD_032
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAGCGCACAAGUAG*CGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7OLD|1|1|U|336, 7OLD|1|1|A|344, 7OLD|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_032 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.1083
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7OLD|1|1|C|333
7OLD|1|1|G|334
7OLD|1|1|A|335
7OLD|1|1|U|336
7OLD|1|1|A|337
7OLD|1|1|G|338
7OLD|1|1|C|339
7OLD|1|1|G|340
7OLD|1|1|C|341
7OLD|1|1|A|342
7OLD|1|1|C|343
7OLD|1|1|A|344
7OLD|1|1|A|345
7OLD|1|1|G|346
7OLD|1|1|U|347
7OLD|1|1|A|348
7OLD|1|1|G|349
*
7OLD|1|1|C|356
7OLD|1|1|G|357
7OLD|1|1|A|358
7OLD|1|1|A|359
7OLD|1|1|A|360
7OLD|1|1|G|361
*
7OLD|1|4|C|21
7OLD|1|4|U|22
7OLD|1|4|U|23
7OLD|1|4|G|24
Current chains
- Chain 1
- 26S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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