J3_7OLD_035

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CGCAG*UCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLD_035 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1912

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7OLD|1|1|U|811
7OLD|1|1|A|812
7OLD|1|1|G|813
*
7OLD|1|1|C|845
7OLD|1|1|G|846
7OLD|1|1|C|847
7OLD|1|1|A|848
7OLD|1|1|G|849
*
7OLD|1|1|U|874
7OLD|1|1|C|875
7OLD|1|1|A|876
7OLD|1|1|A|877

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain LR

Ribosomal protein L19