J3_7OLD_037
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCGAUC*GGAAG*CA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_037 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.117
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7OLD|1|1|U|1509
7OLD|1|1|C|1510
7OLD|1|1|G|1511
7OLD|1|1|A|1512
7OLD|1|1|U|1513
7OLD|1|1|C|1514
*
7OLD|1|1|G|1571
7OLD|1|1|G|1572
7OLD|1|1|A|1573
7OLD|1|1|A|1574
7OLD|1|1|G|1575
*
7OLD|1|1|C|1592
7OLD|1|1|A|1593
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
- Chain Ll
- Ribosomal protein eL39
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