J3_7OLD_041
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- 7OLD|1|1|U|2477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_041 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.2837
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|1|A|2395
7OLD|1|1|U|2396
7OLD|1|1|U|2397
7OLD|1|1|G|2398
*
7OLD|1|1|C|2475
7OLD|1|1|U|2476
7OLD|1|1|U|2477
7OLD|1|1|A|2478
7OLD|1|1|U|2479
*
7OLD|1|1|A|2550
7OLD|1|1|G|2551
7OLD|1|1|A|2552
7OLD|1|1|C|2553
7OLD|1|1|A|2554
7OLD|1|1|U|2555
7OLD|1|1|U|2556
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain Li
- 60S ribosomal protein L36
Coloring options: